IL_9Q3Q_079

3D structure

PDB id

9Q3Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of translating Escherichia coli 70S ribosome bound to mRNA, P-site QKF-peptidyl-tRNAPhe, glycyl-tRNAGly in A/T conformation, EF-Tu-GDP, and bottromycin at 2.01A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.01 Å

Loop

Sequence

ACG*CUAU

Length

7 nucleotides

Bulged bases

9Q3Q|1|A|C|2055, 9Q3Q|1|A|U|2613, 9Q3Q|1|A|A|2614

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q3Q_079 not in the Motif Atlas

Homologous match to IL_8B0X_140

Geometric discrepancy: 0.0452

The information below is about IL_8B0X_140

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80025.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

9

Unit IDs

9Q3Q|1|A|A|2054
9Q3Q|1|A|C|2055
9Q3Q|1|A|G|2056
*
9Q3Q|1|A|C|2612
9Q3Q|1|A|U|2613
9Q3Q|1|A|A|2614
9Q3Q|1|A|U|2615

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L32

Chain D

50S ribosomal protein L3

Chain U

Large ribosomal subunit protein uL22