IL_9Q3Q_085

3D structure

PDB id

9Q3Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of translating Escherichia coli 70S ribosome bound to mRNA, P-site QKF-peptidyl-tRNAPhe, glycyl-tRNAGly in A/T conformation, EF-Tu-GDP, and bottromycin at 2.01A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.01 Å

Loop

Sequence

AUGUGUAGGAUAGGUGG*CCACCCUU

Length

25 nucleotides

Bulged bases

9Q3Q|1|A|U|2118

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q3Q|1|A|A|2108
9Q3Q|1|A|U|2109
9Q3Q|1|A|G|2110
9Q3Q|1|A|U|2111
9Q3Q|1|A|G|2112
9Q3Q|1|A|U|2113
9Q3Q|1|A|A|2114
9Q3Q|1|A|G|2115
9Q3Q|1|A|G|2116
9Q3Q|1|A|A|2117
9Q3Q|1|A|U|2118
9Q3Q|1|A|A|2119
9Q3Q|1|A|G|2120
9Q3Q|1|A|G|2121
9Q3Q|1|A|U|2122
9Q3Q|1|A|G|2123
9Q3Q|1|A|G|2124
*
9Q3Q|1|A|C|2174
9Q3Q|1|A|C|2175
9Q3Q|1|A|A|2176
9Q3Q|1|A|C|2177
9Q3Q|1|A|C|2178
9Q3Q|1|A|C|2179
9Q3Q|1|A|U|2180
9Q3Q|1|A|U|2181

Current chains

Chain A

23S Ribosomal RNA

Nearby chains