IL_9Q3Q_086

3D structure

PDB id

9Q3Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of translating Escherichia coli 70S ribosome bound to mRNA, P-site QKF-peptidyl-tRNAPhe, glycyl-tRNAGly in A/T conformation, EF-Tu-GDP, and bottromycin at 2.01A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.01 Å

Loop

Sequence

GGAGGCUUUGAAG*UGGAGCCGACCUUGAAAUAC

Length

33 nucleotides

Bulged bases

9Q3Q|1|A|U|2130, 9Q3Q|1|A|U|2132, 9Q3Q|1|A|U|2166, 9Q3Q|1|A|A|2171, 9Q3Q|1|A|U|2172

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q3Q|1|A|G|2124
9Q3Q|1|A|G|2125
9Q3Q|1|A|A|2126
9Q3Q|1|A|G|2127
9Q3Q|1|A|G|2128
9Q3Q|1|A|C|2129
9Q3Q|1|A|U|2130
9Q3Q|1|A|U|2131
9Q3Q|1|A|U|2132
9Q3Q|1|A|G|2133
9Q3Q|1|A|A|2134
9Q3Q|1|A|A|2135
9Q3Q|1|A|G|2136
*
9Q3Q|1|A|U|2155
9Q3Q|1|A|G|2156
9Q3Q|1|A|G|2157
9Q3Q|1|A|A|2158
9Q3Q|1|A|G|2159
9Q3Q|1|A|C|2160
9Q3Q|1|A|C|2161
9Q3Q|1|A|G|2162
9Q3Q|1|A|A|2163
9Q3Q|1|A|C|2164
9Q3Q|1|A|C|2165
9Q3Q|1|A|U|2166
9Q3Q|1|A|U|2167
9Q3Q|1|A|G|2168
9Q3Q|1|A|A|2169
9Q3Q|1|A|A|2170
9Q3Q|1|A|A|2171
9Q3Q|1|A|U|2172
9Q3Q|1|A|A|2173
9Q3Q|1|A|C|2174

Current chains

Chain A

23S Ribosomal RNA

Nearby chains