IL_9Q3Q_100

3D structure

PDB id

9Q3Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of translating Escherichia coli 70S ribosome bound to mRNA, P-site QKF-peptidyl-tRNAPhe, glycyl-tRNAGly in A/T conformation, EF-Tu-GDP, and bottromycin at 2.01A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.01 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

9Q3Q|1|A|A|2602

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q3Q_100 not in the Motif Atlas

Homologous match to IL_8B0X_159

Geometric discrepancy: 0.1061

The information below is about IL_8B0X_159

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

175

Unit IDs

9Q3Q|1|A|C|2591
9Q3Q|1|A|G|2592
*
9Q3Q|1|A|C|2601
9Q3Q|1|A|A|2602
9Q3Q|1|A|G|2603

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain x

Transfer RNA; tRNA