IL_9Q3Q_129

3D structure

PDB id

9Q3Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of translating Escherichia coli 70S ribosome bound to mRNA, P-site QKF-peptidyl-tRNAPhe, glycyl-tRNAGly in A/T conformation, EF-Tu-GDP, and bottromycin at 2.01A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.01 Å

Loop

Sequence

GGAC*GC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q3Q_129 not in the Motif Atlas

Geometric match to IL_9E6Q_071

Geometric discrepancy: 0.2694

The information below is about IL_9E6Q_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87975.2

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

10

Unit IDs

9Q3Q|1|a|G|203
9Q3Q|1|a|G|204
9Q3Q|1|a|A|205
9Q3Q|1|a|C|206
*
9Q3Q|1|a|G|213
9Q3Q|1|a|C|214

Current chains

Chain a

16S Ribosomal RNA

Nearby chains