IL_9Q3Q_138
3D structure
- PDB id
- 9Q3Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of translating Escherichia coli 70S ribosome bound to mRNA, P-site QKF-peptidyl-tRNAPhe, glycyl-tRNAGly in A/T conformation, EF-Tu-GDP, and bottromycin at 2.01A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.01 Å
Loop
- Sequence
- GGAGG*CGUUAC
- Length
- 11 nucleotides
- Bulged bases
- 9Q3Q|1|a|U|485
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q3Q_138 not in the Motif Atlas
- Homologous match to IL_8B0X_021
- Geometric discrepancy: 0.0715
- The information below is about IL_8B0X_021
- Detailed Annotation
- tWW-tWH-tHS
- Broad Annotation
- tWW-tWH-tHS
- Motif group
- IL_82100.1
- Basepair signature
- cWW-tWW-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
9Q3Q|1|a|G|446
9Q3Q|1|a|G|447
9Q3Q|1|a|A|448
9Q3Q|1|a|G|449
9Q3Q|1|a|G|450
*
9Q3Q|1|a|C|483
9Q3Q|1|a|G|484
9Q3Q|1|a|U|485
9Q3Q|1|a|U|486
9Q3Q|1|a|A|487
9Q3Q|1|a|C|488
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain d
- Small ribosomal subunit protein uS4
- Chain p
- Small ribosomal subunit protein bS16
Coloring options: