IL_9Q3Q_139

3D structure

PDB id

9Q3Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of translating Escherichia coli 70S ribosome bound to mRNA, P-site QKF-peptidyl-tRNAPhe, glycyl-tRNAGly in A/T conformation, EF-Tu-GDP, and bottromycin at 2.01A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.01 Å

Loop

Sequence

GAAGGGA*UCAUUGAC

Length

15 nucleotides

Bulged bases

9Q3Q|1|a|G|455

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q3Q_139 not in the Motif Atlas

Homologous match to IL_8B0X_022

Geometric discrepancy: 0.5241

The information below is about IL_8B0X_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q3Q|1|a|G|450
9Q3Q|1|a|A|451
9Q3Q|1|a|A|452
9Q3Q|1|a|G|453
9Q3Q|1|a|G|454
9Q3Q|1|a|G|455
9Q3Q|1|a|A|456
*
9Q3Q|1|a|U|476
9Q3Q|1|a|C|477
9Q3Q|1|a|A|478
9Q3Q|1|a|U|479
9Q3Q|1|a|U|480
9Q3Q|1|a|G|481
9Q3Q|1|a|A|482
9Q3Q|1|a|C|483

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain p

Small ribosomal subunit protein bS16