IL_9Q3Q_143
3D structure
- PDB id
- 9Q3Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of translating Escherichia coli 70S ribosome bound to mRNA, P-site QKF-peptidyl-tRNAPhe, glycyl-tRNAGly in A/T conformation, EF-Tu-GDP, and bottromycin at 2.01A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.01 Å
Loop
- Sequence
- CGCAG*UCAGG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q3Q_143 not in the Motif Atlas
- Homologous match to IL_8B0X_026
- Geometric discrepancy: 0.058
- The information below is about IL_8B0X_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_05821.3
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 19
Unit IDs
9Q3Q|1|a|C|580
9Q3Q|1|a|G|581
9Q3Q|1|a|C|582
9Q3Q|1|a|A|583
9Q3Q|1|a|G|584
*
9Q3Q|1|a|U|757
9Q3Q|1|a|C|758
9Q3Q|1|a|A|759
9Q3Q|1|a|G|760
9Q3Q|1|a|G|761
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain h
- Small ribosomal subunit protein uS8
- Chain l
- Small ribosomal subunit protein uS12
- Chain o
- Small ribosomal subunit protein uS15
- Chain q
- Small ribosomal subunit protein uS17
Coloring options: