IL_9Q6P_204

3D structure

PDB id

9Q6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with pleuromutilin and protein Y at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GCUAG*CAAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q6P_204 not in the Motif Atlas

Geometric match to IL_9H3G_004

Geometric discrepancy: 0.2434

The information below is about IL_9H3G_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87767.5

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

9Q6P|1|2A|G|875
9Q6P|1|2A|C|876
9Q6P|1|2A|U|877
9Q6P|1|2A|A|878
9Q6P|1|2A|G|879
*
9Q6P|1|2A|C|898
9Q6P|1|2A|A|899
9Q6P|1|2A|A|900
9Q6P|1|2A|A|901
9Q6P|1|2A|C|902

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2Q

50S ribosomal protein L16

Chain 2Z

50S ribosomal protein L25