IL_9Q6P_297

3D structure

PDB id

9Q6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with pleuromutilin and protein Y at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CAUCAG*CGACGACG

Length

14 nucleotides

Bulged bases

9Q6P|1|2a|U|244, 9Q6P|1|2a|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q6P_297 not in the Motif Atlas

Homologous match to IL_8B0X_013

Geometric discrepancy: 0.1103

The information below is about IL_8B0X_013

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.7

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

8

Unit IDs

9Q6P|1|2a|C|242
9Q6P|1|2a|A|243
9Q6P|1|2a|U|244
9Q6P|1|2a|C|245
9Q6P|1|2a|A|246
9Q6P|1|2a|G|247
*
9Q6P|1|2a|C|277
9Q6P|1|2a|G|278
9Q6P|1|2a|A|279
9Q6P|1|2a|C|280
9Q6P|1|2a|G|281
9Q6P|1|2a|A|282
9Q6P|1|2a|C|283
9Q6P|1|2a|G|284

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2l

30S ribosomal protein S12

Chain 2q

30S ribosomal protein S17