IL_9Q6Q_074

3D structure

PDB id

9Q6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with pleuromutilin-18 triazole derivative and protein Y at 2.90A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UCAAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q6Q_074 not in the Motif Atlas

Homologous match to IL_7A0S_069

Geometric discrepancy: 0.23

The information below is about IL_7A0S_069

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

No text annotation

Motif group

IL_89021.4

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9Q6Q|1|1A|U|1851
9Q6Q|1|1A|C|1852
9Q6Q|1|1A|A|1853
9Q6Q|1|1A|A|1854
9Q6Q|1|1A|G|1855
*
9Q6Q|1|1A|C|1887
9Q6Q|1|1A|G|1888
9Q6Q|1|1A|A|1889
9Q6Q|1|1A|A|1890
9Q6Q|1|1A|G|1891

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L28