IL_9Q6Q_116

3D structure

PDB id

9Q6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with pleuromutilin-18 triazole derivative and protein Y at 2.90A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GU*GAC

Length

5 nucleotides

Bulged bases

9Q6Q|1|1a|A|397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q6Q_116 not in the Motif Atlas

Homologous match to IL_8B0X_002

Geometric discrepancy: 0.1949

The information below is about IL_8B0X_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

188

Unit IDs

9Q6Q|1|1a|G|44
9Q6Q|1|1a|U|45
*
9Q6Q|1|1a|G|396
9Q6Q|1|1a|A|397
9Q6Q|1|1a|C|398

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1p

30S ribosomal protein S16