IL_9Q6Q_171

3D structure

PDB id

9Q6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with pleuromutilin-18 triazole derivative and protein Y at 2.90A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q6Q_171 not in the Motif Atlas

Homologous match to IL_8B0X_061

Geometric discrepancy: 0.1369

The information below is about IL_8B0X_061

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.5

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

50

Unit IDs

9Q6Q|1|1a|G|1416
9Q6Q|1|1a|G|1417
9Q6Q|1|1a|A|1418
9Q6Q|1|1a|G|1419
*
9Q6Q|1|1a|U|1481
9Q6Q|1|1a|G|1482
9Q6Q|1|1a|A|1483
9Q6Q|1|1a|C|1484

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1A

Large subunit ribosomal RNA; LSU rRNA