IL_9Q6Q_216

3D structure

PDB id

9Q6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with pleuromutilin-18 triazole derivative and protein Y at 2.90A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGA*UUUAAAGAGUGCGUAAUAGCUCAC

Length

27 nucleotides

Bulged bases

9Q6Q|1|2A|U|1083, 9Q6Q|1|2A|A|1086, 9Q6Q|1|2A|A|1088, 9Q6Q|1|2A|A|1095

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q6Q|1|2A|G|1055
9Q6Q|1|2A|G|1056
9Q6Q|1|2A|A|1057
*
9Q6Q|1|2A|U|1081
9Q6Q|1|2A|U|1082
9Q6Q|1|2A|U|1083
9Q6Q|1|2A|A|1084
9Q6Q|1|2A|A|1085
9Q6Q|1|2A|A|1086
9Q6Q|1|2A|G|1087
9Q6Q|1|2A|A|1088
9Q6Q|1|2A|G|1089
9Q6Q|1|2A|U|1090
9Q6Q|1|2A|G|1091
9Q6Q|1|2A|C|1092
9Q6Q|1|2A|G|1093
9Q6Q|1|2A|U|1094
9Q6Q|1|2A|A|1095
9Q6Q|1|2A|A|1096
9Q6Q|1|2A|U|1097
9Q6Q|1|2A|A|1098
9Q6Q|1|2A|G|1099
9Q6Q|1|2A|C|1100
9Q6Q|1|2A|U|1101
9Q6Q|1|2A|C|1102
9Q6Q|1|2A|A|1103
9Q6Q|1|2A|C|1104

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2H

50S ribosomal protein L6

Chain 2Q

50S ribosomal protein L16