IL_9Q6R_204

3D structure

PDB id

9Q6R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with pleuromutilin-27 triazole derivative and protein Y at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

GCUAG*CAAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q6R_204 not in the Motif Atlas

Homologous match to IL_8B0X_094

Geometric discrepancy: 0.2911

The information below is about IL_8B0X_094

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87767.5

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

9Q6R|1|2A|G|875
9Q6R|1|2A|C|876
9Q6R|1|2A|U|877
9Q6R|1|2A|A|878
9Q6R|1|2A|G|879
*
9Q6R|1|2A|C|898
9Q6R|1|2A|A|899
9Q6R|1|2A|A|900
9Q6R|1|2A|A|901
9Q6R|1|2A|C|902

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2Q

50S ribosomal protein L16

Chain 2Z

50S ribosomal protein L25