IL_9Q6S_203

3D structure

PDB id

9Q6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with pleuromutilin-30 triazole derivative and protein Y at 2.90A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GCACU*AAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q6S_203 not in the Motif Atlas

Homologous match to IL_7A0S_029

Geometric discrepancy: 0.1696

The information below is about IL_7A0S_029

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_16301.4

Basepair signature

cWW-cWS-tWH-R-L-R-cWW

Number of instances in this motif group

11

Unit IDs

9Q6S|1|2A|G|864
9Q6S|1|2A|C|865
9Q6S|1|2A|A|866
9Q6S|1|2A|C|867
9Q6S|1|2A|U|868
*
9Q6S|1|2A|A|909
9Q6S|1|2A|A|910
9Q6S|1|2A|A|911
9Q6S|1|2A|C|912

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2B

5S ribosomal RNA; 5S rRNA

Chain 2Q

50S ribosomal protein L16

Chain 2Z

50S ribosomal protein L25