IL_9Q6T_187

3D structure

PDB id

9Q6T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with tiamulin and protein Y at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

GAAC*GAGUGAAAUAGAGC

Length

18 nucleotides

Bulged bases

9Q6T|1|2A|U|504, 9Q6T|1|2A|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q6T_187 not in the Motif Atlas

Geometric match to IL_9DFE_012

Geometric discrepancy: 0.0642

The information below is about IL_9DFE_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44923.4

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

11

Unit IDs

9Q6T|1|2A|G|481
9Q6T|1|2A|A|482
9Q6T|1|2A|A|483
9Q6T|1|2A|C|484
*
9Q6T|1|2A|G|496
9Q6T|1|2A|A|497
9Q6T|1|2A|G|498
9Q6T|1|2A|U|499
9Q6T|1|2A|G|500
9Q6T|1|2A|A|501
9Q6T|1|2A|A|502
9Q6T|1|2A|A|503
9Q6T|1|2A|U|504
9Q6T|1|2A|A|505
9Q6T|1|2A|G|506
9Q6T|1|2A|A|507
9Q6T|1|2A|G|508
9Q6T|1|2A|C|509

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2W

50S ribosomal protein L22

Chain 2Y

50S ribosomal protein L24