IL_9Q6U_143

3D structure

PDB id

9Q6U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with tiamulin-26 triazole derivative and protein Y at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAGAG*UGGU

Length

9 nucleotides

Bulged bases

9Q6U|1|1a|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q6U_143 not in the Motif Atlas

Homologous match to IL_8B0X_032

Geometric discrepancy: 0.1209

The information below is about IL_8B0X_032

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.5

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

42

Unit IDs

9Q6U|1|1a|G|662
9Q6U|1|1a|A|663
9Q6U|1|1a|G|664
9Q6U|1|1a|A|665
9Q6U|1|1a|G|666
*
9Q6U|1|1a|U|740
9Q6U|1|1a|G|741
9Q6U|1|1a|G|742
9Q6U|1|1a|U|743

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1f

30S ribosomal protein S6

Chain 1o

30S ribosomal protein S15

Chain 1r

30S ribosomal protein S18