IL_9Q6U_321
3D structure
- PDB id
- 9Q6U (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with tiamulin-26 triazole derivative and protein Y at 2.80A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GGAGUACG*UGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q6U_321 not in the Motif Atlas
- Homologous match to IL_8B0X_037
- Geometric discrepancy: 0.082
- The information below is about IL_8B0X_037
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_84044.4
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 7
Unit IDs
9Q6U|1|2a|G|887
9Q6U|1|2a|G|888
9Q6U|1|2a|A|889
9Q6U|1|2a|G|890
9Q6U|1|2a|U|891
9Q6U|1|2a|A|892
9Q6U|1|2a|C|893
9Q6U|1|2a|G|894
*
9Q6U|1|2a|U|905
9Q6U|1|2a|G|906
9Q6U|1|2a|A|907
9Q6U|1|2a|A|908
9Q6U|1|2a|A|909
9Q6U|1|2a|C|910
Current chains
- Chain 2a
- 16S Ribosomal RNA
Nearby chains
- Chain 2l
- 30S ribosomal protein S12
- Chain 2q
- 30S ribosomal protein S17
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