IL_9Q6V_196

3D structure

PDB id

9Q6V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with tiamulin-31 triazole derivative and protein Y at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

GGA*UAACC

Length

8 nucleotides

Bulged bases

9Q6V|1|2A|G|776, 9Q6V|1|2A|A|788, 9Q6V|1|2A|A|789, 9Q6V|1|2A|C|790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q6V_196 not in the Motif Atlas

Homologous match to IL_7A0S_021

Geometric discrepancy: 0.243

The information below is about IL_7A0S_021

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_89509.4

Basepair signature

cWW-cWW

Number of instances in this motif group

11

Unit IDs

9Q6V|1|2A|G|775
9Q6V|1|2A|G|776
9Q6V|1|2A|A|777
*
9Q6V|1|2A|U|787
9Q6V|1|2A|A|788
9Q6V|1|2A|A|789
9Q6V|1|2A|C|790
9Q6V|1|2A|C|791

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2D

50S ribosomal protein L2

Chain 2F

50S ribosomal protein L4

Chain 2W

50S ribosomal protein L22