IL_9Q6V_318

3D structure

PDB id

9Q6V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with tiamulin-31 triazole derivative and protein Y at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

GGAAU*GGAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q6V_318 not in the Motif Atlas

Homologous match to IL_8B0X_176

Geometric discrepancy: 0.0643

The information below is about IL_8B0X_176

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71154.6

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

18

Unit IDs

9Q6V|1|2a|G|673
9Q6V|1|2a|G|674
9Q6V|1|2a|A|675
9Q6V|1|2a|A|676
9Q6V|1|2a|U|677
*
9Q6V|1|2a|G|713
9Q6V|1|2a|G|714
9Q6V|1|2a|A|715
9Q6V|1|2a|A|716
9Q6V|1|2a|C|717

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2f

30S ribosomal protein S6

Chain 2k

30S ribosomal protein S11

Chain 2r

30S ribosomal protein S18