IL_9Q6V_321

3D structure

PDB id

9Q6V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with tiamulin-31 triazole derivative and protein Y at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q6V_321 not in the Motif Atlas

Homologous match to IL_8B0X_036

Geometric discrepancy: 0.0638

The information below is about IL_8B0X_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05821.4

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

21

Unit IDs

9Q6V|1|2a|C|779
9Q6V|1|2a|A|780
9Q6V|1|2a|A|781
9Q6V|1|2a|A|782
9Q6V|1|2a|C|783
*
9Q6V|1|2a|G|799
9Q6V|1|2a|G|800
9Q6V|1|2a|U|801
9Q6V|1|2a|A|802
9Q6V|1|2a|G|803

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2D

50S ribosomal protein L2

Chain 2k

30S ribosomal protein S11