IL_9Q7Q_006
3D structure
- PDB id
- 9Q7Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- ABCE1-eRF1-RNC-AMD1C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- CUGAAUUU*AUUAGUCAG
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q7Q_006 not in the Motif Atlas
- Homologous match to IL_8GLP_005
- Geometric discrepancy: 0.0911
- The information below is about IL_8GLP_005
- Detailed Annotation
- 9x8 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_93502.3
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
9Q7Q|1|5|C|30
9Q7Q|1|5|U|31
9Q7Q|1|5|G|32
9Q7Q|1|5|A|33
9Q7Q|1|5|A|34
9Q7Q|1|5|U|35
9Q7Q|1|5|U|36
9Q7Q|1|5|U|37
*
9Q7Q|1|5|A|44
9Q7Q|1|5|U|45
9Q7Q|1|5|U|46
9Q7Q|1|5|A|47
9Q7Q|1|5|G|48
9Q7Q|1|5|U|49
9Q7Q|1|5|C|50
9Q7Q|1|5|A|51
9Q7Q|1|5|G|52
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain L
- Large ribosomal subunit protein eL13
- Chain N
- 60S ribosomal protein L15
- Chain a
- 60S ribosomal protein L27a
- Chain j
- Ribosomal protein L37
- Chain o
- Large ribosomal subunit protein eL42
Coloring options: