IL_9Q7Q_051

3D structure

PDB id

9Q7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

ABCE1-eRF1-RNC-AMD1C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q7Q_051 not in the Motif Atlas

Homologous match to IL_8GLP_059

Geometric discrepancy: 0.1272

The information below is about IL_8GLP_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15190.5

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

29

Unit IDs

9Q7Q|1|5|C|1551
9Q7Q|1|5|G|1552
9Q7Q|1|5|A|1553
9Q7Q|1|5|A|1554
9Q7Q|1|5|G|1555
*
9Q7Q|1|5|U|1572
9Q7Q|1|5|G|1573
9Q7Q|1|5|G|1574
9Q7Q|1|5|A|1575
9Q7Q|1|5|G|1576

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

Ribosomal protein L8

Chain R

Large ribosomal subunit protein eL19

Chain p

eL43