IL_9Q7Q_077

3D structure

PDB id

9Q7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

ABCE1-eRF1-RNC-AMD1C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

9Q7Q|1|5|U|2084

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q7Q_077 not in the Motif Atlas

Homologous match to IL_8GLP_083

Geometric discrepancy: 0.2118

The information below is about IL_8GLP_083

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

72

Unit IDs

9Q7Q|1|5|C|2083
9Q7Q|1|5|U|2084
9Q7Q|1|5|G|2085
*
9Q7Q|1|5|C|2272
9Q7Q|1|5|G|2273

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain F

Large ribosomal subunit protein uL30

Chain Q

Large ribosomal subunit protein eL18

Chain e

60S ribosomal protein L32