IL_9Q7Q_143

3D structure

PDB id

9Q7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

ABCE1-eRF1-RNC-AMD1C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

GUCCC*GGUC

Length

9 nucleotides

Bulged bases

9Q7Q|1|5|C|4772

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q7Q_143 not in the Motif Atlas

Geometric match to IL_9PN5_184

Geometric discrepancy: 0.3813

The information below is about IL_9PN5_184

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.5

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

42

Unit IDs

9Q7Q|1|5|G|4769
9Q7Q|1|5|U|4770
9Q7Q|1|5|C|4771
9Q7Q|1|5|C|4772
9Q7Q|1|5|C|4773
*
9Q7Q|1|5|G|4862
9Q7Q|1|5|G|4863
9Q7Q|1|5|U|4864
9Q7Q|1|5|C|4865

Current chains

Chain 5

28S rRNA

Nearby chains

Chain H

60S ribosomal protein L9

Chain O

Large ribosomal subunit protein uL13