IL_9Q87_019

3D structure

PDB id

9Q87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+

Experimental method

ELECTRON MICROSCOPY

Resolution

1.55 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q87_019 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.1036

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

9Q87|1|A|U|409
9Q87|1|A|G|410
9Q87|1|A|A|411
9Q87|1|A|A|412
9Q87|1|A|G|413
9Q87|1|A|A|414
9Q87|1|A|A|415
9Q87|1|A|G|416
*
9Q87|1|A|U|427
9Q87|1|A|G|428
9Q87|1|A|U|429
9Q87|1|A|A|430
9Q87|1|A|A|431
9Q87|1|A|A|432
9Q87|1|A|G|433

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

Small ribosomal subunit protein uS4