IL_9Q87_074

3D structure

PDB id

9Q87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+

Experimental method

ELECTRON MICROSCOPY

Resolution

1.55 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q87_074 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.3235

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

9Q87|1|a|C|274
9Q87|1|a|C|275
9Q87|1|a|U|276
9Q87|1|a|G|277
9Q87|1|a|A|278
9Q87|1|a|A|279
9Q87|1|a|U|280
9Q87|1|a|C|281
*
9Q87|1|a|G|359
9Q87|1|a|U|360
9Q87|1|a|G|361
9Q87|1|a|A|362
9Q87|1|a|G|363

Current chains

Chain a

23S rRNA

Nearby chains