IL_9Q87_103
3D structure
- PDB id
- 9Q87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.55 Å
Loop
- Sequence
- GGGAAAC*GGAAGAUGUAACGGGGC
- Length
- 24 nucleotides
- Bulged bases
- 9Q87|1|a|A|1129, 9Q87|1|a|U|1132
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q87_103 not in the Motif Atlas
- Homologous match to IL_5J7L_281
- Geometric discrepancy: 0.0548
- The information below is about IL_5J7L_281
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.3
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
9Q87|1|a|G|1026
9Q87|1|a|G|1027
9Q87|1|a|G|1028
9Q87|1|a|A|1029
9Q87|1|a|A|1030
9Q87|1|a|A|1031
9Q87|1|a|C|1032
*
9Q87|1|a|G|1126
9Q87|1|a|G|1127
9Q87|1|a|A|1128
9Q87|1|a|A|1129
9Q87|1|a|G|1130
9Q87|1|a|A|1131
9Q87|1|a|U|1132
9Q87|1|a|G|1133
9Q87|1|a|U|1134
9Q87|1|a|A|1135
9Q87|1|a|A|1136
9Q87|1|a|C|1137
9Q87|1|a|G|1138
9Q87|1|a|G|1139
9Q87|1|a|G|1140
9Q87|1|a|G|1141
9Q87|1|a|C|1142
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 3
- Large ribosomal subunit protein bL36
- Chain d
- Large ribosomal subunit protein uL3
- Chain i
- Large ribosomal subunit protein uL13
- Chain l
- Large ribosomal subunit protein uL16
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