IL_9Q87_107

3D structure

PDB id

9Q87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+

Experimental method

ELECTRON MICROSCOPY

Resolution

1.55 Å

Loop

Sequence

GAAAG*CUC

Length

8 nucleotides

Bulged bases

9Q87|1|a|A|1090

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q87_107 not in the Motif Atlas

Homologous match to IL_9DFE_043

Geometric discrepancy: 0.3761

The information below is about IL_9DFE_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q87|1|a|G|1089
9Q87|1|a|A|1090
9Q87|1|a|A|1091
9Q87|1|a|A|1092
9Q87|1|a|G|1093
*
9Q87|1|a|C|1102
9Q87|1|a|U|1103
9Q87|1|a|C|1104

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

Large ribosomal subunit protein bL36

Chain 5

Large ribosomal subunit protein uL11