IL_9Q87_111
3D structure
- PDB id
- 9Q87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.55 Å
Loop
- Sequence
- AUAAGUAA*UGAAAUU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q87_111 not in the Motif Atlas
- Homologous match to IL_5J7L_289
- Geometric discrepancy: 0.0406
- The information below is about IL_5J7L_289
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
9Q87|1|a|A|1264
9Q87|1|a|U|1265
9Q87|1|a|A|1266
9Q87|1|a|A|1267
9Q87|1|a|G|1268
9Q87|1|a|U|1269
9Q87|1|a|A|1270
9Q87|1|a|A|1271
*
9Q87|1|a|U|2015
9Q87|1|a|G|2016
9Q87|1|a|A|2017
9Q87|1|a|A|2018
9Q87|1|a|A|2019
9Q87|1|a|U|2020
9Q87|1|a|U|2021
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain e
- Large ribosomal subunit protein uL4
- Chain m
- Large ribosomal subunit protein bL17
- Chain r
- Large ribosomal subunit protein uL22
- Chain z
- Large ribosomal subunit protein bL32
Coloring options: