IL_9Q87_116

3D structure

PDB id

9Q87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+

Experimental method

ELECTRON MICROSCOPY

Resolution

1.55 Å

Loop

Sequence

UG*CAUCAG

Length

8 nucleotides

Bulged bases

9Q87|1|a|U|1586

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q87_116 not in the Motif Atlas

Homologous match to IL_5J7L_294

Geometric discrepancy: 0.378

The information below is about IL_5J7L_294

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87211.1

Basepair signature

cWW-cSW-L-cWW-L

Number of instances in this motif group

1

Unit IDs

9Q87|1|a|U|1417
9Q87|1|a|G|1418
*
9Q87|1|a|C|1584
9Q87|1|a|A|1585
9Q87|1|a|U|1586
9Q87|1|a|C|1587
9Q87|1|a|A|1588
9Q87|1|a|G|1589

Current chains

Chain a

23S rRNA

Nearby chains