IL_9Q87_152

3D structure

PDB id

9Q87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+

Experimental method

ELECTRON MICROSCOPY

Resolution

1.55 Å

Loop

Sequence

GGGAG*CGACCUUGAAAUACC

Length

20 nucleotides

Bulged bases

9Q87|1|a|A|2167, 9Q87|1|a|C|2168, 9Q87|1|a|G|2172, 9Q87|1|a|A|2173, 9Q87|1|a|A|2175, 9Q87|1|a|U|2176

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q87|1|a|G|2127
9Q87|1|a|G|2128
9Q87|1|a|G|2129
9Q87|1|a|A|2130
9Q87|1|a|G|2131
*
9Q87|1|a|C|2165
9Q87|1|a|G|2166
9Q87|1|a|A|2167
9Q87|1|a|C|2168
9Q87|1|a|C|2169
9Q87|1|a|U|2170
9Q87|1|a|U|2171
9Q87|1|a|G|2172
9Q87|1|a|A|2173
9Q87|1|a|A|2174
9Q87|1|a|A|2175
9Q87|1|a|U|2176
9Q87|1|a|A|2177
9Q87|1|a|C|2178
9Q87|1|a|C|2179

Current chains

Chain a

23S rRNA

Nearby chains