IL_9Q87_153

3D structure

PDB id

9Q87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+

Experimental method

ELECTRON MICROSCOPY

Resolution

1.55 Å

Loop

Sequence

CUUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

9Q87|1|a|U|2135, 9Q87|1|a|U|2136, 9Q87|1|a|A|2162

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q87_153 not in the Motif Atlas

Homologous match to IL_5J7L_330

Geometric discrepancy: 0.3768

The information below is about IL_5J7L_330

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

9Q87|1|a|C|2133
9Q87|1|a|U|2134
9Q87|1|a|U|2135
9Q87|1|a|U|2136
9Q87|1|a|G|2137
9Q87|1|a|A|2138
9Q87|1|a|A|2139
9Q87|1|a|G|2140
*
9Q87|1|a|U|2159
9Q87|1|a|G|2160
9Q87|1|a|G|2161
9Q87|1|a|A|2162
9Q87|1|a|G|2163

Current chains

Chain a

23S rRNA

Nearby chains