IL_9QEH_031

3D structure

PDB id

9QEH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the A2085-methylated 50S ribosome of a MLSb resistant S. aureus strain "MNY196" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.08 Å

Loop

Sequence

CCA*UG

Length

5 nucleotides

Bulged bases

9QEH|1|A|C|1039

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QEH_031 not in the Motif Atlas

Homologous match to IL_4WF9_035

Geometric discrepancy: 0.1009

The information below is about IL_4WF9_035

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

67

Unit IDs

9QEH|1|A|C|1038
9QEH|1|A|C|1039
9QEH|1|A|A|1040
*
9QEH|1|A|U|1203
9QEH|1|A|G|1204

Current chains

Chain A

23S rRNA

Nearby chains

Chain H

Large ribosomal subunit protein uL13

Chain O

Large ribosomal subunit protein bL20

Chain P

Large ribosomal subunit protein bL21

Chain X

Large ribosomal subunit protein uL30