IL_9QEH_045

3D structure

PDB id

9QEH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the A2085-methylated 50S ribosome of a MLSb resistant S. aureus strain "MNY196" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.08 Å

Loop

Sequence

GGAAG*CGC

Length

8 nucleotides

Bulged bases

9QEH|1|A|G|1369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QEH_045 not in the Motif Atlas

Homologous match to IL_4WF9_050

Geometric discrepancy: 0.0926

The information below is about IL_4WF9_050

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

No text annotation

Motif group

IL_06671.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

11

Unit IDs

9QEH|1|A|G|1356
9QEH|1|A|G|1357
9QEH|1|A|A|1358
9QEH|1|A|A|1359
9QEH|1|A|G|1360
*
9QEH|1|A|C|1368
9QEH|1|A|G|1369
9QEH|1|A|C|1370

Current chains

Chain A

23S rRNA

Nearby chains

Chain Q

Large ribosomal subunit protein uL22