IL_9QEH_058

3D structure

PDB id

9QEH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the A2085-methylated 50S ribosome of a MLSb resistant S. aureus strain "MNY196" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.08 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

9QEH|1|A|G|1743

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QEH_058 not in the Motif Atlas

Homologous match to IL_9DFE_068

Geometric discrepancy: 0.0778

The information below is about IL_9DFE_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20700.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

11

Unit IDs

9QEH|1|A|C|1730
9QEH|1|A|G|1731
9QEH|1|A|U|1732
9QEH|1|A|A|1733
9QEH|1|A|A|1734
9QEH|1|A|C|1735
*
9QEH|1|A|G|1740
9QEH|1|A|G|1741
9QEH|1|A|A|1742
9QEH|1|A|G|1743
9QEH|1|A|A|1744
9QEH|1|A|A|1745
9QEH|1|A|G|1746

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2