IL_9QEH_065

3D structure

PDB id

9QEH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the A2085-methylated 50S ribosome of a MLSb resistant S. aureus strain "MNY196" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.08 Å

Loop

Sequence

AGGAG*CGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QEH_065 not in the Motif Atlas

Geometric match to IL_4UYK_004

Geometric discrepancy: 0.2707

The information below is about IL_4UYK_004

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_70744.1

Basepair signature

cWW-tSH-tHS-L-R-cWW

Number of instances in this motif group

2

Unit IDs

9QEH|1|A|A|1883
9QEH|1|A|G|1884
9QEH|1|A|G|1885
9QEH|1|A|A|1886
9QEH|1|A|G|1887
*
9QEH|1|A|C|1909
9QEH|1|A|G|1910
9QEH|1|A|A|1911
9QEH|1|A|A|1912
9QEH|1|A|U|1913

Current chains

Chain A

23S rRNA

Nearby chains

Chain 11

E_site tRNA