IL_9QEH_076

3D structure

PDB id

9QEH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the A2085-methylated 50S ribosome of a MLSb resistant S. aureus strain "MNY196" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.08 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QEH_076 not in the Motif Atlas

Homologous match to IL_5J7L_333

Geometric discrepancy: 0.0613

The information below is about IL_5J7L_333

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

9QEH|1|A|C|2377
9QEH|1|A|G|2378
9QEH|1|A|A|2379
9QEH|1|A|G|2380
*
9QEH|1|A|C|2391
9QEH|1|A|G|2392
9QEH|1|A|A|2393
9QEH|1|A|G|2394

Current chains

Chain A

23S rRNA

Nearby chains

Chain 3

Large ribosomal subunit protein bL35

Chain U

Large ribosomal subunit protein bL27