IL_9QEH_077

3D structure

PDB id

9QEH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the A2085-methylated 50S ribosome of a MLSb resistant S. aureus strain "MNY196" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.08 Å

Loop

Sequence

UUC*GG

Length

5 nucleotides

Bulged bases

9QEH|1|A|U|2429

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QEH_077 not in the Motif Atlas

Homologous match to IL_5J7L_334

Geometric discrepancy: 0.4446

The information below is about IL_5J7L_334

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

9QEH|1|A|U|2428
9QEH|1|A|U|2429
9QEH|1|A|C|2430
*
9QEH|1|A|G|2441
9QEH|1|A|G|2442

Current chains

Chain A

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL33A

Chain 3

Large ribosomal subunit protein bL35

Chain J

Large ribosomal subunit protein uL15