IL_9QEH_090

3D structure

PDB id

9QEH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the A2085-methylated 50S ribosome of a MLSb resistant S. aureus strain "MNY196" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.08 Å

Loop

Sequence

CCUCU*AUG

Length

8 nucleotides

Bulged bases

9QEH|1|A|U|2753

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QEH_090 not in the Motif Atlas

Homologous match to IL_4WF9_101

Geometric discrepancy: 0.0668

The information below is about IL_4WF9_101

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.13

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

23

Unit IDs

9QEH|1|A|C|2707
9QEH|1|A|C|2708
9QEH|1|A|U|2709
9QEH|1|A|C|2710
9QEH|1|A|U|2711
*
9QEH|1|A|A|2752
9QEH|1|A|U|2753
9QEH|1|A|G|2754

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

Large ribosomal subunit protein uL3

Chain I

Large ribosomal subunit protein uL14

Chain N

Large ribosomal subunit protein bL19