IL_9QLO_012
3D structure
- PDB id
- 9QLO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NMT1-NAC bound human RNC with full length ARF1 - State 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.47 Å
Loop
- Sequence
- CCGCUCGUGG*CGGCG
- Length
- 15 nucleotides
- Bulged bases
- 9QLO|1|L5|C|183, 9QLO|1|L5|C|185, 9QLO|1|L5|G|186, 9QLO|1|L5|U|187, 9QLO|1|L5|G|188
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9QLO_012 not in the Motif Atlas
- Geometric match to IL_7VYX_004
- Geometric discrepancy: 0.3814
- The information below is about IL_7VYX_004
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_71154.6
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 18
Unit IDs
9QLO|1|L5|C|180
9QLO|1|L5|C|181
9QLO|1|L5|G|182
9QLO|1|L5|C|183
9QLO|1|L5|U|184
9QLO|1|L5|C|185
9QLO|1|L5|G|186
9QLO|1|L5|U|187
9QLO|1|L5|G|188
9QLO|1|L5|G|189
*
9QLO|1|L5|C|252
9QLO|1|L5|G|253
9QLO|1|L5|G|254
9QLO|1|L5|C|255
9QLO|1|L5|G|256
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain L8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LL
- 60S ribosomal protein L13
- Chain Lh
- 60S ribosomal protein L35
- Chain Lj
- Large ribosomal subunit protein eL37
Coloring options: