IL_9QLO_048

3D structure

PDB id

9QLO (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMT1-NAC bound human RNC with full length ARF1 - State 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GC*GCC

Length

5 nucleotides

Bulged bases

9QLO|1|L5|C|1485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QLO_048 not in the Motif Atlas

Homologous match to IL_8GLP_055

Geometric discrepancy: 0.0428

The information below is about IL_8GLP_055

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

72

Unit IDs

9QLO|1|L5|G|1479
9QLO|1|L5|C|1480
*
9QLO|1|L5|G|1484
9QLO|1|L5|C|1485
9QLO|1|L5|C|1486

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LL

60S ribosomal protein L13

Chain La

60S ribosomal protein L27a

Chain Li

60S ribosomal protein L36