IL_9QLO_121

3D structure

PDB id

9QLO (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMT1-NAC bound human RNC with full length ARF1 - State 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GUGAGGC*GCUC

Length

11 nucleotides

Bulged bases

9QLO|1|L5|G|4084, 9QLO|1|L5|G|4086, 9QLO|1|L5|G|4087, 9QLO|1|L5|C|4162, 9QLO|1|L5|U|4163

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QLO_121 not in the Motif Atlas

Homologous match to IL_8GLP_135

Geometric discrepancy: 0.0385

The information below is about IL_8GLP_135

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52092.4

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

6

Unit IDs

9QLO|1|L5|G|4082
9QLO|1|L5|U|4083
9QLO|1|L5|G|4084
9QLO|1|L5|A|4085
9QLO|1|L5|G|4086
9QLO|1|L5|G|4087
9QLO|1|L5|C|4088
*
9QLO|1|L5|G|4161
9QLO|1|L5|C|4162
9QLO|1|L5|U|4163
9QLO|1|L5|C|4164

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LA

60S ribosomal protein L8

Chain LG

60S ribosomal protein L7a

Chain LX

60S ribosomal protein L23a