IL_9QLO_205

3D structure

PDB id

9QLO (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMT1-NAC bound human RNC with full length ARF1 - State 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

9QLO|1|S2|A|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QLO_205 not in the Motif Atlas

Homologous match to IL_9H3G_189

Geometric discrepancy: 0.0454

The information below is about IL_9H3G_189

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.4

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

9QLO|1|S2|G|665
9QLO|1|S2|U|666
9QLO|1|S2|U|667
9QLO|1|S2|A|668
9QLO|1|S2|A|669
9QLO|1|S2|A|670
9QLO|1|S2|A|671
*
9QLO|1|S2|U|1161
9QLO|1|S2|C|1162

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SC

40S ribosomal protein S2

Chain SX

40S ribosomal protein S23

Chain Sa

40S ribosomal protein S26