IL_9QLO_222
3D structure
- PDB id
- 9QLO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NMT1-NAC bound human RNC with full length ARF1 - State 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.47 Å
Loop
- Sequence
- GCGAU*GCAGC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9QLO_222 not in the Motif Atlas
- Geometric match to IL_8D29_010
- Geometric discrepancy: 0.3009
- The information below is about IL_8D29_010
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_71154.6
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 18
Unit IDs
9QLO|1|S2|G|1097
9QLO|1|S2|C|1098
9QLO|1|S2|G|1099
9QLO|1|S2|A|1100
9QLO|1|S2|U|1101
*
9QLO|1|S2|G|1131
9QLO|1|S2|C|1132
9QLO|1|S2|A|1133
9QLO|1|S2|G|1134
9QLO|1|S2|C|1135
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SA
- 40S ribosomal protein SA
- Chain SB
- 40S ribosomal protein S3a
- Chain SN
- 40S ribosomal protein S13
- Chain SR
- 40S ribosomal protein S17
- Chain SV
- 40S ribosomal protein S21
- Chain SW
- 40S ribosomal protein S15a
- Chain Sa
- 40S ribosomal protein S26
- Chain Sb
- 40S ribosomal protein S27
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