IL_9QLO_242

3D structure

PDB id

9QLO (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMT1-NAC bound human RNC with full length ARF1 - State 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

ACUA*UUCU

Length

8 nucleotides

Bulged bases

9QLO|1|S2|C|1403, 9QLO|1|S2|U|1404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QLO_242 not in the Motif Atlas

Homologous match to IL_9H3G_226

Geometric discrepancy: 0.0965

The information below is about IL_9H3G_226

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_78800.5

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

5

Unit IDs

9QLO|1|S2|A|1402
9QLO|1|S2|C|1403
9QLO|1|S2|U|1404
9QLO|1|S2|A|1405
*
9QLO|1|S2|U|1441
9QLO|1|S2|U|1442
9QLO|1|S2|C|1443
9QLO|1|S2|U|1444

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SQ

40S ribosomal protein S16

Chain SU

40S ribosomal protein S20

Chain Sg

Receptor of activated protein C kinase 1