IL_9QOH_158

3D structure

PDB id

9QOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse Ribosome POST translocation state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CCCCGGAUAG*UGCGGAGAG

Length

19 nucleotides

Bulged bases

9QOH|1|A2|C|4409, 9QOH|1|A2|C|4410, 9QOH|1|A2|A|4416, 9QOH|1|A2|G|4515, 9QOH|1|A2|C|4516, 9QOH|1|A2|G|4518, 9QOH|1|A2|A|4521

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QOH|1|A2|C|4408
9QOH|1|A2|C|4409
9QOH|1|A2|C|4410
9QOH|1|A2|C|4411
9QOH|1|A2|G|4412
9QOH|1|A2|G|4413
9QOH|1|A2|A|4414
9QOH|1|A2|U|4415
9QOH|1|A2|A|4416
9QOH|1|A2|G|4417
*
9QOH|1|A2|U|4514
9QOH|1|A2|G|4515
9QOH|1|A2|C|4516
9QOH|1|A2|G|4517
9QOH|1|A2|G|4518
9QOH|1|A2|A|4519
9QOH|1|A2|G|4520
9QOH|1|A2|A|4521
9QOH|1|A2|G|4522

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain C1

Large ribosomal subunit protein uL6

Chain G1

Large ribosomal subunit protein eL14

Chain H2

Large ribosomal subunit protein eL6

Chain I2

Large ribosomal subunit protein uL13

Chain M2

Large ribosomal subunit protein eL20