IL_9QQP_007

3D structure

PDB id

9QQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse Ribosome rotated-2 PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGAAU*AAAUGUG

Length

12 nucleotides

Bulged bases

9QQP|1|A2|G|119, 9QQP|1|A2|U|150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QQP|1|A2|C|118
9QQP|1|A2|G|119
9QQP|1|A2|A|120
9QQP|1|A2|A|121
9QQP|1|A2|U|122
*
9QQP|1|A2|A|147
9QQP|1|A2|A|148
9QQP|1|A2|A|149
9QQP|1|A2|U|150
9QQP|1|A2|G|151
9QQP|1|A2|U|152
9QQP|1|A2|G|153

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain B1

Large ribosomal subunit protein eL8

Chain C2

5.8S ribosomal RNA; 5.8S rRNA

Chain H1

Large ribosomal subunit protein eL15

Chain b2

Large ribosomal subunit protein uL29