IL_9QQP_099

3D structure

PDB id

9QQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse Ribosome rotated-2 PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

9QQP|1|A2|U|2635

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QQP|1|A2|C|2622
9QQP|1|A2|G|2623
9QQP|1|A2|U|2624
9QQP|1|A2|A|2625
9QQP|1|A2|A|2626
9QQP|1|A2|C|2627
*
9QQP|1|A2|G|2632
9QQP|1|A2|G|2633
9QQP|1|A2|A|2634
9QQP|1|A2|U|2635
9QQP|1|A2|A|2636
9QQP|1|A2|A|2637
9QQP|1|A2|G|2638

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain h2

60S ribosomal protein L41

Chain j2

Large ribosomal subunit protein eL43

Chain m2

Small subunit ribosomal RNA; SSU rRNA